ga4gh-standards-validator

GA4GH standards compliance skill for data sharing and interoperability

509 stars

Best use case

ga4gh-standards-validator is best used when you need a repeatable AI agent workflow instead of a one-off prompt.

GA4GH standards compliance skill for data sharing and interoperability

Teams using ga4gh-standards-validator should expect a more consistent output, faster repeated execution, less prompt rewriting.

When to use this skill

You want a reusable workflow that can be run more than once with consistent structure.

When not to use this skill

You only need a quick one-off answer and do not need a reusable workflow.
You cannot install or maintain the underlying files, dependencies, or repository context.

Installation

Claude Code / Cursor / Codex

$curl -o ~/.claude/skills/ga4gh-standards-validator/SKILL.md --create-dirs "https://raw.githubusercontent.com/a5c-ai/babysitter/main/library/specializations/domains/science/bioinformatics/skills/ga4gh-standards-validator/SKILL.md"

Manual Installation

Download SKILL.md from GitHub
Place it in .claude/skills/ga4gh-standards-validator/SKILL.md inside your project
Restart your AI agent — it will auto-discover the skill

How ga4gh-standards-validator Compares

Feature / Agent	ga4gh-standards-validator	Standard Approach
Platform Support	Not specified	Limited / Varies
Context Awareness	High	Baseline
Installation Complexity	Unknown	N/A

Frequently Asked Questions

What does this skill do?

GA4GH standards compliance skill for data sharing and interoperability

Where can I find the source code?

You can find the source code on GitHub using the link provided at the top of the page.

SKILL.md Source

# GA4GH Standards Validator Skill

## Purpose
Provide GA4GH standards compliance for data sharing and interoperability.

## Capabilities
- VCF/BAM format validation
- htsget API compliance
- Beacon protocol testing
- DRS/WES/TES compliance
- Data model validation
- Interoperability testing

## Usage Guidelines
- Validate file formats against specifications
- Test API compliance for data sharing
- Implement Beacon for variant queries
- Ensure workflow execution standards compliance
- Validate data models for exchange
- Document compliance status

## Dependencies
- GA4GH toolkits
- htslib
- Beacon v2

## Process Integration
- Genomic Data Governance (genomic-data-governance)
- Reproducible Research Workflow (reproducible-research)

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