igv-genome-browser

IGV integration skill for interactive genome visualization and review

509 stars

Best use case

igv-genome-browser is best used when you need a repeatable AI agent workflow instead of a one-off prompt.

IGV integration skill for interactive genome visualization and review

Teams using igv-genome-browser should expect a more consistent output, faster repeated execution, less prompt rewriting.

When to use this skill

You want a reusable workflow that can be run more than once with consistent structure.

When not to use this skill

You only need a quick one-off answer and do not need a reusable workflow.
You cannot install or maintain the underlying files, dependencies, or repository context.

Installation

Claude Code / Cursor / Codex

$curl -o ~/.claude/skills/igv-genome-browser/SKILL.md --create-dirs "https://raw.githubusercontent.com/a5c-ai/babysitter/main/library/specializations/domains/science/bioinformatics/skills/igv-genome-browser/SKILL.md"

Manual Installation

Download SKILL.md from GitHub
Place it in .claude/skills/igv-genome-browser/SKILL.md inside your project
Restart your AI agent — it will auto-discover the skill

How igv-genome-browser Compares

Feature / Agent	igv-genome-browser	Standard Approach
Platform Support	Not specified	Limited / Varies
Context Awareness	High	Baseline
Installation Complexity	Unknown	N/A

Frequently Asked Questions

What does this skill do?

IGV integration skill for interactive genome visualization and review

Where can I find the source code?

You can find the source code on GitHub using the link provided at the top of the page.

SKILL.md Source

# IGV Genome Browser Skill

## Purpose
Enable IGV integration for interactive genome visualization and review.

## Capabilities
- BAM/VCF/BED visualization
- Batch screenshot generation
- Session management
- Track customization
- Region navigation
- Multi-sample comparison

## Usage Guidelines
- Load appropriate reference genome
- Configure tracks for analysis needs
- Generate batch screenshots for reports
- Save sessions for reproducibility
- Navigate to regions of interest
- Compare multiple samples visually

## Dependencies
- IGV
- IGV.js
- JBrowse2

## Process Integration
- Clinical Variant Interpretation (clinical-variant-interpretation)
- Tumor Molecular Profiling (tumor-molecular-profiling)
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)

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