managing-specimen-integrity
Evaluates specimen adequacy and rejection criteria with pre-analytical quality documentation. Use when assessing specimen quality, documenting rejection reasons, or managing pre-analytical errors.
Best use case
managing-specimen-integrity is best used when you need a repeatable AI agent workflow instead of a one-off prompt.
Evaluates specimen adequacy and rejection criteria with pre-analytical quality documentation. Use when assessing specimen quality, documenting rejection reasons, or managing pre-analytical errors.
Teams using managing-specimen-integrity should expect a more consistent output, faster repeated execution, less prompt rewriting.
When to use this skill
- You want a reusable workflow that can be run more than once with consistent structure.
When not to use this skill
- You only need a quick one-off answer and do not need a reusable workflow.
- You cannot install or maintain the underlying files, dependencies, or repository context.
Installation
Claude Code / Cursor / Codex
Manual Installation
- Download SKILL.md from GitHub
- Place it in
.claude/skills/managing-specimen-integrity/SKILL.mdinside your project - Restart your AI agent — it will auto-discover the skill
How managing-specimen-integrity Compares
| Feature / Agent | managing-specimen-integrity | Standard Approach |
|---|---|---|
| Platform Support | Not specified | Limited / Varies |
| Context Awareness | High | Baseline |
| Installation Complexity | Unknown | N/A |
Frequently Asked Questions
What does this skill do?
Evaluates specimen adequacy and rejection criteria with pre-analytical quality documentation. Use when assessing specimen quality, documenting rejection reasons, or managing pre-analytical errors.
Where can I find the source code?
You can find the source code on GitHub using the link provided at the top of the page.
SKILL.md Source
# Managing Specimen Integrity Evaluates specimen adequacy and rejection criteria with pre-analytical quality documentation. ## Why This Skill Exists Pre-analytical errors account for 46-68% of all laboratory errors, and specimen integrity failures are the leading cause. A hemolyzed potassium specimen, a clotted coagulation tube, an unlabeled surgical specimen, or an improperly transported microbiology culture can each produce misleading results that drive incorrect clinical decisions. The economic cost is substantial: recollection disrupts clinical workflows, delays diagnosis, and in some cases (neonatal, oncology, difficult-access patients) recollection may be impossible or harmful. CLIA 42 CFR 493.1242 requires laboratories to establish specimen submission and handling instructions and define criteria for specimen rejection. CAP accreditation (GEN.40490-40530 series) mandates documented acceptance/rejection criteria, specimen labeling requirements (two patient identifiers), and processes for managing non-conforming specimens. The Joint Commission patient safety goals reinforce two-identifier specimen labeling. This skill provides a systematic framework for evaluating specimen integrity and managing pre-analytical quality. --- ## Checkpoint A: Pre-Draft Intake (Mandatory) 1. **Specimen type** — Blood (tube type), urine, tissue, body fluid, swab, or other? Default: blood specimen. 2. **Test(s) ordered** — What analytes are requested? Different tests have different integrity requirements. Default: comprehensive metabolic panel. 3. **Issue identified** — Hemolysis, lipemia, icterus, clotting, underfill, mislabel, wrong tube, delayed transport, temperature excursion, or other? Default: hemolysis. 4. **Patient context** — Difficult draw (neonatal, dialysis, oncology), repeated collection issue, stat/urgent request? Default: routine adult. 5. **Collection site** — Was the specimen drawn from an IV line, port, or direct venipuncture? Default: direct venipuncture. 6. **Time since collection** — How long has the specimen been in transit or storage? Default: < 2 hours. 7. **Recollection feasibility** — Can a new specimen be obtained without significant burden? Default: yes. ### Documents to Request - Specimen requisition form with two identifiers - Collection time and collector identity - Transport conditions (temperature, time in transit) - Tube type and anticoagulant verification - Hemolysis/lipemia/icterus index from analyzer (if quantified) - Institutional specimen acceptance/rejection criteria policy - Test-specific specimen requirements (stability, tube type, volume) - Non-conforming specimen log --- ## Step 1: Specimen Identification and Labeling Verification Verify specimen labeling per CAP and Joint Commission requirements: **Minimum labeling requirements (CAP GEN.40490):** - Two unique patient identifiers (name + DOB, name + MRN, or equivalent) - Date of collection - Time of collection (required for time-sensitive analytes) - Collector identification - Specimen source/type (for non-blood specimens) **Rejection criteria for labeling deficiencies:** | Deficiency | Action | |---|---| | No label on specimen | REJECT — no exceptions. Specimen cannot be relabeled after leaving the patient. | | One identifier only | REJECT — recollect. Two identifiers are non-negotiable per Joint Commission NPSG. | | Label on container but not on tube | REJECT — the tube itself must be labeled, not just an accompanying form. | | Discrepancy between label and requisition | HOLD — contact collector for resolution before processing. | | Illegible label | HOLD — contact collector for verification; reject if unresolvable. | **Exception**: Surgical pathology and cytology specimens may have a reconciliation process per CAP ANP.11700, but the two-identifier requirement still applies. --- ## Step 2: Specimen Condition Assessment Evaluate the physical condition of the specimen: ### Hemolysis Index (Chemistry Analyzers) | H-Index | Hemolysis Level | Affected Analytes | Action | |---|---|---|---| | H < 50 | None/slight | None significantly | Process normally | | H 50-100 | Mild | Potassium (+), LDH (+), AST (+), iron (+) | Report with comment for mildly affected analytes | | H 100-200 | Moderate | K, LDH, AST, iron, total bilirubin, phosphorus | Reject affected analytes; report unaffected | | H > 200 | Gross | Most chemistry analytes affected | Reject specimen; recollect | ### Lipemia Index | L-Index | Lipemia Level | Affected Analytes | Action | |---|---|---|---| | L < 150 | None/slight | None significantly | Process normally | | L 150-300 | Moderate | Electrolytes (pseudohyponatremia), some enzymes | Report with comment | | L > 300 | Gross | Many analytes affected by light scattering | Ultracentrifuge or reject | ### Icterus Index | I-Index | Icterus Level | Affected Analytes | Action | |---|---|---|---| | I < 20 | None/slight | None significantly | Process normally | | I 20-40 | Moderate | Creatinine (Jaffe method), some enzymatic assays | Report with comment | | I > 40 | Marked | Multiple analytes affected | Report with interference note | --- ## Step 3: Tube Type and Volume Verification Confirm correct tube type and adequate fill volume: **Common tube types and requirements:** | Tube Color (Cap) | Additive | Tests | Minimum Fill | |---|---|---|---| | Light blue (citrate) | 3.2% sodium citrate | PT, PTT, fibrinogen, coag factors | 90% fill (9:1 blood:citrate ratio); underfill produces falsely prolonged results | | Lavender (EDTA) | K2EDTA or K3EDTA | CBC, differential, reticulocyte, HbA1c | Minimum 0.5 mL for CBC | | Green (heparin) | Lithium heparin or sodium heparin | Stat chemistry, ammonia | Per tube manufacturer | | Gold/red (SST/no additive) | Clot activator +/- gel | Routine chemistry, serology, drug levels | Allow 30 min clotting before centrifugation | | Gray (NaF/oxalate) | Sodium fluoride/potassium oxalate | Glucose, lactate | Per tube manufacturer | **Rejection criteria for tube/volume issues:** | Issue | Action | |---|---| | Citrate tube < 90% filled | REJECT for coagulation tests. Insufficient fill alters the blood:citrate ratio. | | Clotted EDTA specimen | REJECT for CBC. Platelet count will be falsely low. | | Wrong tube type for test | REJECT — do not attempt to process. | | Specimen drawn from IV line without discard | REJECT — risk of dilution or contamination with IV fluids. | --- ## Step 4: Stability and Transport Assessment Evaluate whether specimen stability requirements were met: **Critical stability windows:** | Analyte/Test | Room Temp Stability | Refrigerated Stability | Special Requirements | |---|---|---|---| | Potassium | 4 hours (separate from cells) | 24 hours (after separation) | Must centrifuge within 1 hour; pseudohyperkalemia if delayed | | Glucose (no NaF) | 30 minutes | 2 hours | Glycolysis reduces glucose ~7%/hour at room temp | | Ammonia | 15 minutes on ice | 15 minutes on ice | Must be transported on ice and centrifuged immediately | | Blood gas (ABG) | 15 minutes (plastic syringe) | 30 minutes (glass syringe, ice) | Air bubbles invalidate pO2/pCO2 | | Lactic acid | 15 minutes on ice | 15 minutes on ice | Tourniquet time and fist clenching cause false elevation | | Coagulation (PT, PTT) | 4 hours at RT (uncentrifuged) | 24 hours (centrifuged, frozen) | Do not refrigerate uncentrifuged citrate tubes | | CSF cell count | 1 hour | 1 hour | WBCs lyse rapidly; process stat | --- ## Step 5: Non-Conforming Specimen Management and Documentation When a specimen is rejected or has quality issues, follow a structured process: 1. **Document the issue**: Record the specific non-conformance (hemolysis, clot, mislabel, etc.) in the LIS. 2. **Notify the collector/ordering provider**: Per institutional policy, communicate the rejection reason and recollection instructions. 3. **Partial reporting**: When possible, report unaffected analytes from the specimen and reject only those analytes affected by the integrity issue. Add interpretive comments. 4. **Log the non-conformance**: Enter into the non-conforming specimen tracking system for trending. 5. **Trend analysis**: Review non-conformance data monthly. Identify patterns by collector, unit, specimen type, or time of day. Target QI interventions to reduce the most common and impactful errors. 6. **Education and feedback**: Provide targeted education to collection staff when trends are identified. Document training and re-competency assessment. --- ## Checkpoint B: Post-Draft Alignment (Mandatory) 1. Was specimen labeling verified against the two-identifier requirement before any testing? 2. Were hemolysis, lipemia, and icterus indices quantified and applied to analyte-specific rejection criteria? 3. Was tube type confirmed as correct for all ordered tests? 4. Were stability requirements assessed based on collection time and transport conditions? 5. Was the non-conforming specimen documented in the tracking system with collector notification? --- ## Quality Audit - [ ] Two patient identifiers verified on specimen label - [ ] Collection date, time, and collector identity documented - [ ] Hemolysis/lipemia/icterus index quantified by analyzer - [ ] Analyte-specific rejection thresholds applied (not blanket rejection) - [ ] Tube type correct for all ordered tests - [ ] Citrate tube fill volume verified (>= 90% for coagulation) - [ ] Specimen transported within stability requirements - [ ] Temperature-sensitive specimens transported on ice when required - [ ] Non-conforming specimen logged with specific rejection reason - [ ] Collector/provider notified of rejection with recollection instructions - [ ] Monthly trending of non-conformance data performed - [ ] QI interventions documented for identified trends - [ ] Institutional acceptance/rejection criteria policy current and accessible - [ ] Staff competency for specimen assessment documented annually --- ## Guidelines - Never process an unlabeled specimen regardless of urgency — this is a non-negotiable patient safety requirement per CAP and Joint Commission - Quantify hemolysis, lipemia, and icterus using the analyzer's serum index system rather than visual estimation; visual assessment is unreliable and not auditable - Apply analyte-specific rejection thresholds rather than blanket specimen rejection; many analytes are unaffected by mild hemolysis, and rejecting the entire panel wastes clinical resources - For citrate tubes (coagulation testing), reject any tube less than 90% filled; the altered blood-to-citrate ratio produces unreliable PT and PTT results regardless of how "close" the fill appears - Separate serum/plasma from cells within 1 hour of collection for potassium and other cell-sensitive analytes; delayed separation is the most common cause of pseudohyperkalemia - Track non-conforming specimens by collector, unit, and specimen type; use the data for targeted quality improvement rather than punitive action - When recollection is impossible or poses significant patient burden (neonatal, difficult access), consult with the laboratory director about reporting with appropriate qualifiers and comments - Review and update institutional acceptance/rejection criteria at least annually and whenever new tests or specimen types are introduced