cell_line_assay_analysis

Cell Line Assay Analysis - Analyze cell line assays: ChEMBL cell line info, assay search, activity data, and target info. Use this skill for cell biology tasks involving get cell line by id search assay search activity get target by name. Combines 4 tools from 1 SCP server(s).

157 stars

byInternScience

View on GitHub Installation ↓

Best use case

cell_line_assay_analysis is best used when you need a repeatable AI agent workflow instead of a one-off prompt.

Teams using cell_line_assay_analysis should expect a more consistent output, faster repeated execution, less prompt rewriting.

When to use this skill

You want a reusable workflow that can be run more than once with consistent structure.

When not to use this skill

You only need a quick one-off answer and do not need a reusable workflow.
You cannot install or maintain the underlying files, dependencies, or repository context.

Installation

Claude Code / Cursor / Codex

$curl -o ~/.claude/skills/cell_line_assay_analysis/SKILL.md --create-dirs "https://raw.githubusercontent.com/InternScience/DrClaw/main/drclaw/local_skill_hub/science/chemistry/cell_line_assay_analysis/SKILL.md"

Manual Installation

Download SKILL.md from GitHub
Place it in .claude/skills/cell_line_assay_analysis/SKILL.md inside your project
Restart your AI agent — it will auto-discover the skill

How cell_line_assay_analysis Compares

Feature / Agent	cell_line_assay_analysis	Standard Approach
Platform Support	Not specified	Limited / Varies
Context Awareness	High	Baseline
Installation Complexity	Unknown	N/A

Frequently Asked Questions

What does this skill do?

Where can I find the source code?

You can find the source code on GitHub using the link provided at the top of the page.

SKILL.md Source

# Cell Line Assay Analysis

**Discipline**: Cell Biology | **Tools Used**: 4 | **Servers**: 1

## Description

Analyze cell line assays: ChEMBL cell line info, assay search, activity data, and target info.

## Tools Used

- **`get_cell_line_by_id`** from `chembl-server` (streamable-http) - `https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL`
- **`search_assay`** from `chembl-server` (streamable-http) - `https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL`
- **`search_activity`** from `chembl-server` (streamable-http) - `https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL`
- **`get_target_by_name`** from `chembl-server` (streamable-http) - `https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL`

## Workflow

1. Get cell line info
2. Search assays for cell line
3. Search activity data
4. Get target info

## Test Case

### Input
```json
{
    "cell_id": 1,
    "assay_query": "MCF7",
    "target": "estrogen receptor"
}
```

### Expected Steps
1. Get cell line info
2. Search assays for cell line
3. Search activity data
4. Get target info

## Usage Example

> **Note:** Replace `<YOUR_SCP_HUB_API_KEY>` with your own SCP Hub API Key. You can obtain one from the [SCP Platform](https://scphub.intern-ai.org.cn).

```python
import asyncio
import json
from mcp import ClientSession
from mcp.client.streamable_http import streamablehttp_client
from mcp.client.sse import sse_client

SERVERS = {
    "chembl-server": "https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL"
}

async def connect(url, transport_type):
    transport = streamablehttp_client(url=url, headers={"SCP-HUB-API-KEY": "<YOUR_SCP_HUB_API_KEY>"})
    read, write, _ = await transport.__aenter__()
    ctx = ClientSession(read, write)
    session = await ctx.__aenter__()
    await session.initialize()
    return session, ctx, transport

def parse(result):
    try:
        if hasattr(result, 'content') and result.content:
            c = result.content[0]
            if hasattr(c, 'text'):
                try: return json.loads(c.text)
                except: return c.text
        return str(result)
    except: return str(result)

async def main():
    # Connect to required servers
    sessions = {}
    sessions["chembl-server"], _, _ = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/4/Origene-ChEMBL", "streamable-http")

    # Execute workflow steps
    # Step 1: Get cell line info
    result_1 = await sessions["chembl-server"].call_tool("get_cell_line_by_id", arguments={})
    data_1 = parse(result_1)
    print(f"Step 1 result: {json.dumps(data_1, indent=2, ensure_ascii=False)[:500]}")

    # Step 2: Search assays for cell line
    result_2 = await sessions["chembl-server"].call_tool("search_assay", arguments={})
    data_2 = parse(result_2)
    print(f"Step 2 result: {json.dumps(data_2, indent=2, ensure_ascii=False)[:500]}")

    # Step 3: Search activity data
    result_3 = await sessions["chembl-server"].call_tool("search_activity", arguments={})
    data_3 = parse(result_3)
    print(f"Step 3 result: {json.dumps(data_3, indent=2, ensure_ascii=False)[:500]}")

    # Step 4: Get target info
    result_4 = await sessions["chembl-server"].call_tool("get_target_by_name", arguments={})
    data_4 = parse(result_4)
    print(f"Step 4 result: {json.dumps(data_4, indent=2, ensure_ascii=False)[:500]}")

    # Cleanup
    print("Workflow complete!")

if __name__ == "__main__":
    asyncio.run(main())
```

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