nix-acset-worlding

# Nix ACSet Worlding Skill

> **Trit**: -1 (MINUS) - Constraint verification of Nix store semantics

Model Nix store as Attributed C-Set for dependency verification and world management.

## Schema

```julia
@present SchNixStore(FreeSchema) begin
    (Path, Hash, Name, Type, World)::Ob
    
    path_hash::Hom(Path, Hash)
    path_name::Hom(Path, Name)  
    path_type::Hom(Path, Type)
    depends_on::Hom(Path, Path)
    belongs_to::Hom(Path, World)
    
    hash_value::Attr(Hash, String)      # 32-char base32
    name_value::Attr(Name, String)
    type_value::Attr(Type, Symbol)      # :drv, :out, :source, :patch
    world_name::Attr(World, String)
    size_bytes::Attr(Path, Int)
    is_dead::Attr(Path, Bool)
end
```

## Core Operations

### 1. GC Root Analysis

```julia
function live_roots(store::NixStoreACSet)
    filter(p -> !store[:is_dead][p], parts(store, :Path))
end

function dead_paths(store::NixStoreACSet)
    filter(p -> store[:is_dead][p], parts(store, :Path))
end
```

### 2. World Management

Flox environments as categorical worlds:
```
World := {name, dev_env, run_env, manifest}
```

Live worlds (2024-12-24):
- `music-topos` - Audio/visual synthesis
- `stellogen` - Stellar generators
- `bevy_fullscreen_app` - Rust game engine
- `cubical-agda` - HoTT proof assistant

### 3. Dependency Sheaf

Dependencies form a sheaf over the store graph:
```julia
function dependency_sheaf(store::NixStoreACSet)
    # Check transitive closure consistency
    for p in parts(store, :Path)
        deps = store[:depends_on][p]
        for d in deps
            @assert haspart(store, :Path, d)
        end
    end
end
```

## Integration with Gay.jl

### Hash → Color Mapping

```julia
function hash_to_color(hash::String)
    seed = parse(UInt64, hash[1:16], base=32)
    gay_color(seed ⊻ GAY_SEED)
end
```

### GC Statistics (2024-12-24 Snapshot)

| Metric | Value |
|--------|-------|
| Dead paths | 299 |
| Reclaimable | 3.9 GB |
| Live roots | 17 |
| Worlds pruned | 5 |

## Triadic Composition

```
nix-acset-worlding (-1) ⊗ flox-envs (0) ⊗ world-hopping (+1) = 0 ✓
nix-acset-worlding (-1) ⊗ structured-decomp (0) ⊗ gay-mcp (+1) = 0 ✓
```

## Commands

```bash
# Snapshot current store
nix-store --gc --print-roots > roots.txt
nix-store --gc --print-dead > dead.txt

# Build ACSet from snapshot
julia -e 'using NixACSet; build_from_snapshot("dead.txt")'

# Verify dependency sheaf
julia -e 'using NixACSet; verify_sheaf(load_store())'
```

## Categorical Semantics

### Nix Store as Topos

- **Objects**: Store paths
- **Morphisms**: Dependencies (derivation → output)
- **Subobject classifier**: Ω = {live, dead, gc-protected}

### Pullback for Conflict Detection

```
     P ──────→ A
     │         │
     ↓         ↓
     B ──────→ C
```

When two derivations depend on conflicting versions:
- P = empty → conflict detected
- P ≠ empty → shared dependency

## References

1. **Dolstra** - Nix: A Safe and Policy-Free System for Software Deployment
2. **Eelco** - The Purely Functional Software Deployment Model
3. **ACSets.jl** - Attributed C-Sets for algebraic databases
4. **Gay.jl** - Deterministic coloring for store visualization



## Scientific Skill Interleaving

This skill connects to the K-Dense-AI/claude-scientific-skills ecosystem:

### Annotated Data
- **anndata** [○] via bicomodule
  - Hub for annotated matrices

### Bibliography References

- `general`: 734 citations in bib.duckdb

## Cat# Integration

This skill maps to **Cat# = Comod(P)** as a bicomodule in the equipment structure:

```
Trit: 0 (ERGODIC)
Home: Prof
Poly Op: ⊗
Kan Role: Adj
Color: #26D826
```

### GF(3) Naturality

The skill participates in triads satisfying:
```
(-1) + (0) + (+1) ≡ 0 (mod 3)
```

This ensures compositional coherence in the Cat# equipment structure.