maxquant-processor
MaxQuant mass spectrometry skill for protein identification and quantification
Best use case
maxquant-processor is best used when you need a repeatable AI agent workflow instead of a one-off prompt.
MaxQuant mass spectrometry skill for protein identification and quantification
Teams using maxquant-processor should expect a more consistent output, faster repeated execution, less prompt rewriting.
When to use this skill
- You want a reusable workflow that can be run more than once with consistent structure.
When not to use this skill
- You only need a quick one-off answer and do not need a reusable workflow.
- You cannot install or maintain the underlying files, dependencies, or repository context.
Installation
Claude Code / Cursor / Codex
Manual Installation
- Download SKILL.md from GitHub
- Place it in
.claude/skills/maxquant-processor/SKILL.mdinside your project - Restart your AI agent — it will auto-discover the skill
How maxquant-processor Compares
| Feature / Agent | maxquant-processor | Standard Approach |
|---|---|---|
| Platform Support | Not specified | Limited / Varies |
| Context Awareness | High | Baseline |
| Installation Complexity | Unknown | N/A |
Frequently Asked Questions
What does this skill do?
MaxQuant mass spectrometry skill for protein identification and quantification
Where can I find the source code?
You can find the source code on GitHub using the link provided at the top of the page.
SKILL.md Source
# MaxQuant Processor Skill ## Purpose Provide MaxQuant mass spectrometry analysis for protein identification and quantification. ## Capabilities - Andromeda search engine execution - Label-free quantification (LFQ) - TMT/iTRAQ labeled quantification - Match between runs - FDR control and filtering - PTM site localization ## Usage Guidelines - Configure search parameters for experiment type - Select appropriate quantification method - Enable match between runs for improved quantification - Apply FDR filtering at protein and peptide level - Localize PTM sites accurately - Document database and parameter versions ## Dependencies - MaxQuant - MSFragger - Proteome Discoverer ## Process Integration - Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline) - Multi-Omics Data Integration (multi-omics-integration)
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