Codex drawing harness integration. Triggers: 繪圖, draw, figure, chart, plot, mermaid, SVG, Gemini, graph, 生成圖表.

Cline harness for Zotero Keeper and the bundled VS Code extension. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, vsix, Cline.

Cline harness for PubMed Search MCP. Triggers: pubmed search, literature search, unified_search, pipeline, fulltext, release checklist, Cline.

Build or refresh Foam-compatible LLM wikis from Zotero, PubMed, documents, and local Markdown notes using a multi-tool workflow.

Cline harness for this repo (rules + workflows + checks). Triggers: cline harness, full check, release checklist, workflow, 文檔工作流, DFM, citation-ready.

Auto-sync MCP tool documentation when tools are added, removed, or renamed. Triggers: TS, tool-sync, 工具同步, 同步工具, sync tools, new tool, 新增工具, 工具變更, update tools.

Generate comprehensive test suites including static analysis, unit tests, integration tests, E2E tests, and coverage reports. Triggers: TG, test, 測試, 寫測試, coverage, 覆蓋率, pytest, unittest, 驗證.

Auto-update ROADMAP.md status based on completed features. Triggers: RM, roadmap, 路線, 規劃, 完成功能, milestone, 里程碑.

Intelligently update README.md to sync with code changes. Triggers: readme, 說明, 更新說明, update readme, 文檔同步.

Maintain multilingual README versions (English primary, Chinese translation). Triggers: i18n, 翻譯, translate, 多語言, sync readme, 中英文, bilingual.

Comprehensive search using generate_search_queries and unified_search. Triggers: 系統性搜尋, 完整搜尋, 文獻回顧, systematic search, comprehensive, MeSH expansion, 同義詞

Quick literature search using unified_search. Triggers: 搜尋, 找論文, search papers, find articles, PubMed, 文獻搜尋, 快速搜尋

Agent-guided PICO clinical question search using parse_pico handoff and unified_search. Triggers: PICO, 臨床問題, A比B好嗎, treatment comparison, clinical question, 療效比較

Deep exploration from a key paper using related, citing, reference, and citation tree tools. Triggers: 這篇論文的相關研究, 誰引用這篇, 類似文章, related articles, citation tree, paper exploration

Cross-database search using unified_search across academic sources. Triggers: 跨資料庫, multi-source, Semantic Scholar, OpenAlex, CORE, Europe PMC, 綜合搜尋

Complete reference for all 46 PubMed Search MCP tools. Triggers: 工具列表, all tools, 完整功能, tool reference, 有哪些工具

Gene, compound, and variant research using search_gene, search_compound, and search_clinvar. Triggers: 基因, gene, 藥物, drug, compound, PubChem, ClinVar, 變異, variant, 臨床意義

Full text access using get_fulltext, figure extraction, and institutional link tools. Triggers: 全文, fulltext, PDF, open access, 免費下載, PMC, 開放取用

Pipeline persistence — save, load, and reuse structured search plans. Triggers: pipeline, 管道, search plan, 搜尋計畫, 重複搜尋, saved search, 排程, schedule, workflow, DAG

MCP tools for PDF ingestion → extract figures, tables, sections → build knowledge graph. Transforms PDF into queryable assets (images, tables, text) with cross-document RAG. Triggers: PDF, ingest, extract, 圖片, 表格, figure, table, manifest, knowledge graph, 知識圖譜, RAG, 文獻分析.

Update and maintain Memory Bank files (activeContext, progress, decisionLog). Triggers: MB, memory, 記憶, 進度, 更新記憶, update memory, 記錄進度, 更新上下文.

Externalize detailed memory to Memory Bank before conversation summarization to prevent context loss. Triggers: CP, checkpoint, save, 存檔, 記一下, 保存, sync memory, dump, 先記著.

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates, and MCP tool count sync. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

Auto-check and update key documentation before Git commits to keep docs in sync with code. Triggers: docs, 文檔, 更新文檔, sync docs, release, 發布.