humann-functional-profiler
HUMAnN functional profiling skill for metagenomic pathway analysis
Best use case
humann-functional-profiler is best used when you need a repeatable AI agent workflow instead of a one-off prompt.
HUMAnN functional profiling skill for metagenomic pathway analysis
Teams using humann-functional-profiler should expect a more consistent output, faster repeated execution, less prompt rewriting.
When to use this skill
- You want a reusable workflow that can be run more than once with consistent structure.
When not to use this skill
- You only need a quick one-off answer and do not need a reusable workflow.
- You cannot install or maintain the underlying files, dependencies, or repository context.
Installation
Claude Code / Cursor / Codex
Manual Installation
- Download SKILL.md from GitHub
- Place it in
.claude/skills/humann-functional-profiler/SKILL.mdinside your project - Restart your AI agent — it will auto-discover the skill
How humann-functional-profiler Compares
| Feature / Agent | humann-functional-profiler | Standard Approach |
|---|---|---|
| Platform Support | Not specified | Limited / Varies |
| Context Awareness | High | Baseline |
| Installation Complexity | Unknown | N/A |
Frequently Asked Questions
What does this skill do?
HUMAnN functional profiling skill for metagenomic pathway analysis
Where can I find the source code?
You can find the source code on GitHub using the link provided at the top of the page.
SKILL.md Source
# HUMAnN Functional Profiler Skill ## Purpose Provide HUMAnN functional profiling for metagenomic pathway analysis. ## Capabilities - Gene family quantification - MetaCyc pathway abundance - UniRef annotation - Stratified functional profiles - Pathway coverage analysis - Custom database integration ## Usage Guidelines - Run taxonomic profiling first - Quantify gene families and pathways - Stratify by organism when relevant - Analyze pathway coverage - Compare functional profiles - Document database versions ## Dependencies - HUMAnN3 - eggNOG-mapper - Prokka ## Process Integration - Shotgun Metagenomics Pipeline (shotgun-metagenomics)
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