metaphlan-profiler
MetaPhlAn metagenomic profiling skill for species-level community composition
Best use case
metaphlan-profiler is best used when you need a repeatable AI agent workflow instead of a one-off prompt.
MetaPhlAn metagenomic profiling skill for species-level community composition
Teams using metaphlan-profiler should expect a more consistent output, faster repeated execution, less prompt rewriting.
When to use this skill
- You want a reusable workflow that can be run more than once with consistent structure.
When not to use this skill
- You only need a quick one-off answer and do not need a reusable workflow.
- You cannot install or maintain the underlying files, dependencies, or repository context.
Installation
Claude Code / Cursor / Codex
Manual Installation
- Download SKILL.md from GitHub
- Place it in
.claude/skills/metaphlan-profiler/SKILL.mdinside your project - Restart your AI agent — it will auto-discover the skill
How metaphlan-profiler Compares
| Feature / Agent | metaphlan-profiler | Standard Approach |
|---|---|---|
| Platform Support | Not specified | Limited / Varies |
| Context Awareness | High | Baseline |
| Installation Complexity | Unknown | N/A |
Frequently Asked Questions
What does this skill do?
MetaPhlAn metagenomic profiling skill for species-level community composition
Where can I find the source code?
You can find the source code on GitHub using the link provided at the top of the page.
SKILL.md Source
# MetaPhlAn Profiler Skill ## Purpose Enable MetaPhlAn metagenomic profiling for species-level community composition. ## Capabilities - Clade-specific marker gene analysis - Species-level quantification - Strain-level profiling (StrainPhlAn) - Unknown species estimation - Multi-sample heatmaps - Comparative analysis ## Usage Guidelines - Use latest marker database - Profile at species level for most analyses - Apply strain-level analysis when relevant - Visualize community composition - Compare across samples and conditions - Document database versions ## Dependencies - MetaPhlAn4 - StrainPhlAn - mOTUs ## Process Integration - Shotgun Metagenomics Pipeline (shotgun-metagenomics)
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